Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 KRT43P-201ENST00000434019 910 ntBASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC88AQ3V6T2 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 DUX4L45-201ENST00000566406 1057 ntBASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 AC025048.3-201ENST00000590609 569 ntBASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 AC005702.4-201ENST00000618393 416 ntBASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 PCGF3-213ENST00000620529 1899 ntBASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC88AQ3V6T2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AC006033.1-201ENST00000440505 426 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 PFN1P12-201ENST00000455938 534 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AC068587.3-201ENST00000526613 355 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 MIR3615-201ENST00000581999 87 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AC020765.3-201ENST00000613051 740 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AC078925.2-201ENST00000624013 1973 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 BRI3BPP1-201ENST00000594224 787 ntBASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC88AQ3V6T2 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms