Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.23■□□□□ 0.19
CXCL12P48061 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CXCL12P48061 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.23■□□□□ 0.19
CXCL12P48061 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.23■□□□□ 0.19
CXCL12P48061 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CXCL12P48061 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.23■□□□□ 0.19
CXCL12P48061 AC008764.6-201ENST00000595909 2069 ntBASIC16.23■□□□□ 0.19
CXCL12P48061 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.23■□□□□ 0.19
CXCL12P48061 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CXCL12P48061 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CXCL12P48061 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CXCL12P48061 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL12P48061 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL12P48061 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 HAUS4P1-201ENST00000406739 1145 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.22■□□□□ 0.19
CXCL12P48061 ACTG1P3-201ENST00000431775 1114 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CXCL12P48061 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.22■□□□□ 0.19
CXCL12P48061 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.22■□□□□ 0.19
CXCL12P48061 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.22■□□□□ 0.19
CXCL12P48061 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL12P48061 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.22■□□□□ 0.19
CXCL12P48061 AC036164.1-201ENST00000570544 333 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 RPSAP52-203ENST00000622976 1023 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 CU634019.7-201ENST00000624153 1185 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 FP236241.2-201ENST00000624906 1185 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 AC068587.10-201ENST00000641210 219 ntBASIC16.22■□□□□ 0.19
CXCL12P48061 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL12P48061 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.22■□□□□ 0.19
CXCL12P48061 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL12P48061 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.21■□□□□ 0.19
CXCL12P48061 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.21■□□□□ 0.19
CXCL12P48061 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 AL442647.2-201ENST00000429864 857 ntBASIC16.21■□□□□ 0.19
CXCL12P48061 HIST3H2BA-201ENST00000436555 524 ntBASIC16.21■□□□□ 0.19
CXCL12P48061 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.21■□□□□ 0.19
CXCL12P48061 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 RNA5SP412-201ENST00000516234 123 ntBASIC16.21■□□□□ 0.19
CXCL12P48061 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 TDH-203ENST00000531764 1110 ntBASIC16.21■□□□□ 0.19
CXCL12P48061 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.21■□□□□ 0.19
CXCL12P48061 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.21■□□□□ 0.19
CXCL12P48061 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 AC020907.1-201ENST00000616460 1350 ntBASIC16.21■□□□□ 0.19
CXCL12P48061 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.21■□□□□ 0.19
CXCL12P48061 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL12P48061 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
CXCL12P48061 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CXCL12P48061 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CXCL12P48061 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CXCL12P48061 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.21■□□□□ 0.18
CXCL12P48061 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CXCL12P48061 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
CXCL12P48061 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL12P48061 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL12P48061 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CXCL12P48061 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL12P48061 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL12P48061 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms