Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 AC005622.1-201ENST00000636801 1703 ntBASIC17.32■□□□□ 0.36
BDNFP23560 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.32■□□□□ 0.36
BDNFP23560 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.32■□□□□ 0.36
BDNFP23560 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.31■□□□□ 0.36
BDNFP23560 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.31■□□□□ 0.36
BDNFP23560 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
BDNFP23560 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
BDNFP23560 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
BDNFP23560 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
BDNFP23560 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.31■□□□□ 0.36
BDNFP23560 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.31■□□□□ 0.36
BDNFP23560 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.31■□□□□ 0.36
BDNFP23560 AC140878.1-201ENST00000565277 250 ntBASIC17.31■□□□□ 0.36
BDNFP23560 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.31■□□□□ 0.36
BDNFP23560 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
BDNFP23560 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 AC079328.2-201ENST00000561241 3354 ntBASIC17.31■□□□□ 0.36
BDNFP23560 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
BDNFP23560 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BDNFP23560 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.3■□□□□ 0.36
BDNFP23560 AC005052.1-201ENST00000625181 2492 ntBASIC17.3■□□□□ 0.36
BDNFP23560 FO538757.1-201ENST00000623083 1397 ntBASIC17.3■□□□□ 0.36
BDNFP23560 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.3■□□□□ 0.36
BDNFP23560 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
BDNFP23560 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
BDNFP23560 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
BDNFP23560 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
BDNFP23560 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.3■□□□□ 0.36
BDNFP23560 TREML5P-201ENST00000421694 576 ntBASIC17.3■□□□□ 0.36
BDNFP23560 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.3■□□□□ 0.36
BDNFP23560 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.3■□□□□ 0.36
BDNFP23560 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.3■□□□□ 0.36
BDNFP23560 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
BDNFP23560 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.3■□□□□ 0.36
BDNFP23560 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.3■□□□□ 0.36
BDNFP23560 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.3■□□□□ 0.36
BDNFP23560 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.3■□□□□ 0.36
BDNFP23560 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 NKILA-202ENST00000614771 2598 ntBASIC17.3■□□□□ 0.36
BDNFP23560 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BDNFP23560 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
BDNFP23560 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 ALOX12P2-203ENST00000570921 1945 ntBASIC17.29■□□□□ 0.36
BDNFP23560 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 AC055876.3-201ENST00000431496 288 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms