Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PCNAP12004 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.12■□□□□ 0.17
PCNAP12004 AC087641.1-201ENST00000557561 1021 ntBASIC16.12■□□□□ 0.17
PCNAP12004 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.12■□□□□ 0.17
PCNAP12004 CYP2A7P1-201ENST00000595391 815 ntBASIC16.12■□□□□ 0.17
PCNAP12004 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 AL139011.1-202ENST00000642063 584 ntBASIC16.12■□□□□ 0.17
PCNAP12004 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.12■□□□□ 0.17
PCNAP12004 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.12■□□□□ 0.17
PCNAP12004 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCNAP12004 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.11■□□□□ 0.17
PCNAP12004 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PCNAP12004 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.11■□□□□ 0.17
PCNAP12004 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 AC079776.4-201ENST00000511039 504 ntBASIC16.11■□□□□ 0.17
PCNAP12004 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.11■□□□□ 0.17
PCNAP12004 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 AC010654.1-201ENST00000615722 808 ntBASIC16.11■□□□□ 0.17
PCNAP12004 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCNAP12004 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.11■□□□□ 0.17
PCNAP12004 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCNAP12004 SNX33P1-201ENST00000592116 1762 ntBASIC16.1■□□□□ 0.17
PCNAP12004 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.1■□□□□ 0.17
PCNAP12004 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.1■□□□□ 0.17
PCNAP12004 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.1■□□□□ 0.17
PCNAP12004 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 RNA5SP419-201ENST00000515908 135 ntBASIC16.1■□□□□ 0.17
PCNAP12004 UNC93B6-202ENST00000528242 690 ntBASIC16.1■□□□□ 0.17
PCNAP12004 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 OR7E47P-204ENST00000575924 449 ntBASIC16.1■□□□□ 0.17
PCNAP12004 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PCNAP12004 AL121894.2-201ENST00000602977 491 ntBASIC16.1■□□□□ 0.17
PCNAP12004 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PCNAP12004 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.1■□□□□ 0.17
PCNAP12004 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCNAP12004 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
PCNAP12004 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.1■□□□□ 0.17
PCNAP12004 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCNAP12004 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCNAP12004 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.09■□□□□ 0.17
PCNAP12004 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCNAP12004 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCNAP12004 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCNAP12004 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCNAP12004 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
PCNAP12004 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms