Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.51■□□□□ 0.23
SHOX2O60902 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.51■□□□□ 0.23
SHOX2O60902 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.51■□□□□ 0.23
SHOX2O60902 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 AL359183.1-201ENST00000623796 2132 ntBASIC16.51■□□□□ 0.23
SHOX2O60902 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 ACTG1P4-201ENST00000425123 1122 ntBASIC16.5■□□□□ 0.23
SHOX2O60902 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.5■□□□□ 0.23
SHOX2O60902 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 AC005332.3-201ENST00000589904 676 ntBASIC16.5■□□□□ 0.23
SHOX2O60902 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SHOX2O60902 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 AP003680.1-201ENST00000598970 3660 ntBASIC16.5■□□□□ 0.23
SHOX2O60902 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
SHOX2O60902 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHOX2O60902 AL592424.1-201ENST00000563624 1536 ntBASIC16.5■□□□□ 0.23
SHOX2O60902 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.49■□□□□ 0.23
SHOX2O60902 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SHOX2O60902 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SHOX2O60902 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 NUS1P1-201ENST00000446295 882 ntBASIC16.49■□□□□ 0.23
SHOX2O60902 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.49■□□□□ 0.23
SHOX2O60902 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.49■□□□□ 0.23
SHOX2O60902 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.49■□□□□ 0.23
SHOX2O60902 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHOX2O60902 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms