Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 AL031731.1-201ENST00000642131 2094 ntBASIC14.53□□□□□ -0.08
LMX1BO60663 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 GGT4P-201ENST00000623672 1708 ntBASIC14.53□□□□□ -0.08
LMX1BO60663 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 CRYGEP-201ENST00000412192 528 ntBASIC14.53□□□□□ -0.08
LMX1BO60663 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.53□□□□□ -0.08
LMX1BO60663 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.53□□□□□ -0.08
LMX1BO60663 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LMX1BO60663 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.53□□□□□ -0.08
LMX1BO60663 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.53□□□□□ -0.08
LMX1BO60663 AL589182.2-201ENST00000619332 1049 ntBASIC14.53□□□□□ -0.08
LMX1BO60663 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.53□□□□□ -0.08
LMX1BO60663 AL139011.1-202ENST00000642063 584 ntBASIC14.53□□□□□ -0.08
LMX1BO60663 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LMX1BO60663 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.53□□□□□ -0.08
LMX1BO60663 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.53□□□□□ -0.08
LMX1BO60663 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LMX1BO60663 AL596087.1-201ENST00000400979 1969 ntBASIC14.53□□□□□ -0.08
LMX1BO60663 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.52□□□□□ -0.08
LMX1BO60663 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
LMX1BO60663 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.52□□□□□ -0.08
LMX1BO60663 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.52□□□□□ -0.08
LMX1BO60663 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LMX1BO60663 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LMX1BO60663 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.52□□□□□ -0.08
LMX1BO60663 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LMX1BO60663 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.52□□□□□ -0.08
LMX1BO60663 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LMX1BO60663 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.52□□□□□ -0.08
LMX1BO60663 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
LMX1BO60663 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
LMX1BO60663 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.52□□□□□ -0.08
LMX1BO60663 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LMX1BO60663 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.52□□□□□ -0.09
LMX1BO60663 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 AC073621.1-201ENST00000392730 636 ntBASIC14.52□□□□□ -0.09
LMX1BO60663 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.52□□□□□ -0.09
LMX1BO60663 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.52□□□□□ -0.09
LMX1BO60663 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.52□□□□□ -0.09
LMX1BO60663 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.52□□□□□ -0.09
LMX1BO60663 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.52□□□□□ -0.09
LMX1BO60663 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
LMX1BO60663 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.52□□□□□ -0.09
LMX1BO60663 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
LMX1BO60663 MIR4492-201ENST00000581627 80 ntBASIC14.52□□□□□ -0.09
LMX1BO60663 MPDU1-223ENST00000582151 728 ntBASIC14.52□□□□□ -0.09
LMX1BO60663 REXO1L3P-201ENST00000622202 1288 ntBASIC14.52□□□□□ -0.09
LMX1BO60663 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
LMX1BO60663 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.52□□□□□ -0.09
LMX1BO60663 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LMX1BO60663 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LMX1BO60663 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
LMX1BO60663 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LMX1BO60663 AC006504.4-201ENST00000592118 1568 ntBASIC14.51□□□□□ -0.09
LMX1BO60663 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms