Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AC026396.1-201ENST00000419388 421 ntBASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 RIMKLA-202ENST00000431473 8909 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AL160286.2-201ENST00000567150 934 ntBASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AC016405.3-201ENST00000607710 860 ntBASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TMF1-201ENST00000398559 6849 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TGOLN2-202ENST00000377386 6489 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 RCC2P3-201ENST00000418112 1537 ntBASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 DNMT3A-201ENST00000264709 9501 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 COL12A1-202ENST00000345356 5886 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 FAM46A-202ENST00000369754 5664 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 DNAH10OS-201ENST00000514254 5040 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 SVIL-201ENST00000355867 7586 ntAPPRIS P4 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 AC099521.3-201ENST00000624251 2938 ntBASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 EBPL-204ENST00000378272 766 ntTSL 3 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 TERF1P5-201ENST00000477545 1207 ntBASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 KRT18P16-201ENST00000510337 1294 ntBASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 TERF1P2-201ENST00000583350 1212 ntBASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 AL121906.2-201ENST00000621597 723 ntBASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 PCDHGA9-201ENST00000573521 4605 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CHKB-CPT1BH3BT56 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC9.11□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms