Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 KRT18P67-201ENST00000432816 1264 ntBASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 AF186996.4-201ENST00000467186 377 ntBASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 MIR3909-201ENST00000579518 119 ntBASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 PRSS29P-201ENST00000440800 595 ntBASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 CXCL1P1-201ENST00000502804 216 ntBASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 AC148477.8-201ENST00000624298 468 ntBASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHA3Q9Y5H8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHA3Q9Y5H8 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHA3Q9Y5H8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
PCDHA3Q9Y5H8 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDHA3Q9Y5H8 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 PMS2P4-201ENST00000412466 1052 ntBASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 KRT18P56-201ENST00000507275 550 ntBASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 AC117500.6-201ENST00000624871 588 ntBASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 FAM215A-202ENST00000632077 792 ntBASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 U82695.1-201ENST00000635752 1889 ntBASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms