Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 MTHFR-217ENST00000641820 1569 ntBASIC14.47□□□□□ -0.09
NKX3-1Q99801 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 AL512652.2-201ENST00000625156 1716 ntBASIC14.46□□□□□ -0.09
NKX3-1Q99801 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 GGT3P-204ENST00000453783 1664 ntBASIC14.46□□□□□ -0.09
NKX3-1Q99801 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 AC012615.1-201ENST00000565797 1299 ntBASIC14.46□□□□□ -0.09
NKX3-1Q99801 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 TERC-201ENST00000602385 541 ntBASIC14.46□□□□□ -0.09
NKX3-1Q99801 AL353135.1-201ENST00000606729 504 ntBASIC14.46□□□□□ -0.09
NKX3-1Q99801 AL732292.2-201ENST00000609649 430 ntBASIC14.46□□□□□ -0.09
NKX3-1Q99801 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
NKX3-1Q99801 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NKX3-1Q99801 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.46□□□□□ -0.1
NKX3-1Q99801 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
NKX3-1Q99801 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
NKX3-1Q99801 REXO1L8P-201ENST00000604378 1897 ntBASIC14.46□□□□□ -0.1
NKX3-1Q99801 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
NKX3-1Q99801 MST1L-201ENST00000442552 2185 ntBASIC14.46□□□□□ -0.1
NKX3-1Q99801 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
NKX3-1Q99801 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
NKX3-1Q99801 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AL603832.2-201ENST00000566195 2125 ntBASIC14.45□□□□□ -0.1
NKX3-1Q99801 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AC132008.2-207ENST00000454517 770 ntBASIC14.45□□□□□ -0.1
NKX3-1Q99801 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 HLA-J-202ENST00000469281 1241 ntBASIC14.45□□□□□ -0.1
NKX3-1Q99801 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AC073592.4-201ENST00000623827 446 ntBASIC14.45□□□□□ -0.1
NKX3-1Q99801 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 AL031731.1-201ENST00000642131 2094 ntBASIC14.45□□□□□ -0.1
NKX3-1Q99801 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.45□□□□□ -0.1
NKX3-1Q99801 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NKX3-1Q99801 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms