Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 AC073648.2-201ENST00000510116 352 ntBASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 IGHV3-65-201ENST00000523210 341 ntBASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 AC011270.2-201ENST00000624293 2550 ntBASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 TSPY26P-202ENST00000565928 3884 ntBASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4AQ8WYN0 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 FER1L4-210ENST00000615531 5998 ntBASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 OR7E47P-204ENST00000575924 449 ntBASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 AL356488.2-201ENST00000602755 427 ntBASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 AC008735.5-201ENST00000623544 497 ntBASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4AQ8WYN0 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CDC14C-201ENST00000428251 1719 ntBASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 LINC02447-202ENST00000501888 2146 ntBASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4AQ8WYN0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 AC144831.1-201ENST00000573312 2656 ntBASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms