Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.44■□□□□ 0.38
LIG3P49916 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.44■□□□□ 0.38
LIG3P49916 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.44■□□□□ 0.38
LIG3P49916 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.44■□□□□ 0.38
LIG3P49916 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.44■□□□□ 0.38
LIG3P49916 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.44■□□□□ 0.38
LIG3P49916 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.44■□□□□ 0.38
LIG3P49916 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.44■□□□□ 0.38
LIG3P49916 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIG3P49916 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LIG3P49916 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.43■□□□□ 0.38
LIG3P49916 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.43■□□□□ 0.38
LIG3P49916 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.43■□□□□ 0.38
LIG3P49916 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.43■□□□□ 0.38
LIG3P49916 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.43■□□□□ 0.38
LIG3P49916 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.43■□□□□ 0.38
LIG3P49916 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.43■□□□□ 0.38
LIG3P49916 AL589182.2-201ENST00000619332 1049 ntBASIC17.43■□□□□ 0.38
LIG3P49916 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.43■□□□□ 0.38
LIG3P49916 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LIG3P49916 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.43■□□□□ 0.38
LIG3P49916 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.43■□□□□ 0.38
LIG3P49916 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIG3P49916 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
LIG3P49916 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LIG3P49916 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.43■□□□□ 0.38
LIG3P49916 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIG3P49916 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIG3P49916 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 NORAD-201ENST00000565493 5339 ntBASIC17.42■□□□□ 0.38
LIG3P49916 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.42■□□□□ 0.38
LIG3P49916 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.42■□□□□ 0.38
LIG3P49916 AC092910.1-201ENST00000482027 1129 ntBASIC17.42■□□□□ 0.38
LIG3P49916 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 AC105339.3-201ENST00000560043 636 ntBASIC17.42■□□□□ 0.38
LIG3P49916 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.42■□□□□ 0.38
LIG3P49916 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIG3P49916 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.42■□□□□ 0.38
LIG3P49916 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIG3P49916 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms