Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.01□□□□□ -0.17
USF1P22415 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.01□□□□□ -0.17
USF1P22415 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
USF1P22415 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
USF1P22415 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
USF1P22415 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
USF1P22415 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
USF1P22415 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
USF1P22415 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
USF1P22415 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
USF1P22415 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14□□□□□ -0.17
USF1P22415 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14□□□□□ -0.17
USF1P22415 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 WRB-204ENST00000398753 699 ntTSL 3 BASIC14□□□□□ -0.17
USF1P22415 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
USF1P22415 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
USF1P22415 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14□□□□□ -0.17
USF1P22415 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
USF1P22415 AC087641.1-201ENST00000557561 1021 ntBASIC14□□□□□ -0.17
USF1P22415 AL031055.1-201ENST00000606362 631 ntBASIC14□□□□□ -0.17
USF1P22415 MIR6080-201ENST00000617359 66 ntBASIC14□□□□□ -0.17
USF1P22415 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
USF1P22415 AC008267.7-201ENST00000624570 1194 ntBASIC14□□□□□ -0.17
USF1P22415 AC084121.4-201ENST00000641598 221 ntBASIC14□□□□□ -0.17
USF1P22415 AF228730.8-201ENST00000642140 221 ntBASIC14□□□□□ -0.17
USF1P22415 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
USF1P22415 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
USF1P22415 AC008677.1-201ENST00000519230 1561 ntBASIC14□□□□□ -0.17
USF1P22415 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
USF1P22415 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
USF1P22415 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 TOP3BP1-201ENST00000420768 1380 ntBASIC13.99□□□□□ -0.17
USF1P22415 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
USF1P22415 FO538757.1-201ENST00000623083 1397 ntBASIC13.99□□□□□ -0.17
USF1P22415 AL365209.1-201ENST00000624418 6473 ntBASIC13.99□□□□□ -0.17
USF1P22415 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.99□□□□□ -0.17
USF1P22415 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.99□□□□□ -0.17
USF1P22415 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC13.99□□□□□ -0.17
USF1P22415 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.99□□□□□ -0.17
USF1P22415 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
USF1P22415 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 RNU1-129P-201ENST00000384064 167 ntBASIC13.99□□□□□ -0.17
USF1P22415 SPDYE14P-201ENST00000442619 822 ntBASIC13.99□□□□□ -0.17
USF1P22415 TSPY16P-201ENST00000449843 468 ntBASIC13.99□□□□□ -0.17
USF1P22415 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.99□□□□□ -0.17
USF1P22415 SLC25A39P2-201ENST00000537614 270 ntBASIC13.99□□□□□ -0.17
USF1P22415 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
USF1P22415 U1.21-201ENST00000580816 167 ntBASIC13.99□□□□□ -0.17
USF1P22415 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.99□□□□□ -0.17
USF1P22415 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.99□□□□□ -0.17
USF1P22415 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USF1P22415 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms