Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.05■□□□□ 0.64
LIG1P18858 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.05■□□□□ 0.64
LIG1P18858 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIG1P18858 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.04■□□□□ 0.64
LIG1P18858 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG1P18858 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG1P18858 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.04■□□□□ 0.64
LIG1P18858 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIG1P18858 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIG1P18858 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.04■□□□□ 0.64
LIG1P18858 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.04■□□□□ 0.64
LIG1P18858 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.04■□□□□ 0.64
LIG1P18858 AC104109.2-201ENST00000602919 1418 ntBASIC19.04■□□□□ 0.64
LIG1P18858 AC004706.3-202ENST00000621574 984 ntBASIC19.04■□□□□ 0.64
LIG1P18858 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.04■□□□□ 0.64
LIG1P18858 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
LIG1P18858 AC006449.6-201ENST00000612330 2296 ntBASIC19.04■□□□□ 0.64
LIG1P18858 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIG1P18858 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
LIG1P18858 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.03■□□□□ 0.64
LIG1P18858 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 AL139424.1-201ENST00000607572 797 ntBASIC19.03■□□□□ 0.64
LIG1P18858 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.64
LIG1P18858 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
LIG1P18858 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG1P18858 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.03■□□□□ 0.64
LIG1P18858 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
LIG1P18858 AC092384.3-202ENST00000564646 2873 ntBASIC19.03■□□□□ 0.64
LIG1P18858 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG1P18858 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.03■□□□□ 0.64
LIG1P18858 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
LIG1P18858 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
LIG1P18858 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.02■□□□□ 0.64
LIG1P18858 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
LIG1P18858 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.02■□□□□ 0.64
LIG1P18858 PAWRP1-201ENST00000451083 565 ntBASIC19.02■□□□□ 0.64
LIG1P18858 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 AC136632.2-201ENST00000512891 861 ntBASIC19.02■□□□□ 0.64
LIG1P18858 RNA5SP415-201ENST00000517246 115 ntBASIC19.02■□□□□ 0.64
LIG1P18858 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 MPDU1-223ENST00000582151 728 ntBASIC19.02■□□□□ 0.64
LIG1P18858 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.02■□□□□ 0.64
LIG1P18858 AC005593.1-201ENST00000624894 515 ntBASIC19.02■□□□□ 0.64
LIG1P18858 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.02■□□□□ 0.64
LIG1P18858 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.02■□□□□ 0.64
LIG1P18858 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.02■□□□□ 0.64
LIG1P18858 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIG1P18858 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG1P18858 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms