Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 AL139288.1-201ENST00000623748 933 ntBASIC16.02■□□□□ 0.16
LDLRP01130 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.02■□□□□ 0.15
LDLRP01130 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
LDLRP01130 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.02■□□□□ 0.15
LDLRP01130 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.02■□□□□ 0.15
LDLRP01130 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDLRP01130 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.01■□□□□ 0.15
LDLRP01130 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 AC010460.3-201ENST00000511359 1579 ntBASIC16.01■□□□□ 0.15
LDLRP01130 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.01■□□□□ 0.15
LDLRP01130 AC097374.2-201ENST00000618617 1306 ntBASIC16.01■□□□□ 0.15
LDLRP01130 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.01■□□□□ 0.15
LDLRP01130 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.01■□□□□ 0.15
LDLRP01130 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.01■□□□□ 0.15
LDLRP01130 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 AC019129.2-201ENST00000609837 1235 ntBASIC16.01■□□□□ 0.15
LDLRP01130 AC107918.4-202ENST00000641623 219 ntBASIC16.01■□□□□ 0.15
LDLRP01130 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.01■□□□□ 0.15
LDLRP01130 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.01■□□□□ 0.15
LDLRP01130 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.01■□□□□ 0.15
LDLRP01130 NORAD-201ENST00000565493 5339 ntBASIC16.01■□□□□ 0.15
LDLRP01130 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDLRP01130 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.01■□□□□ 0.15
LDLRP01130 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16■□□□□ 0.15
LDLRP01130 AC006538.1-201ENST00000567905 1585 ntBASIC16■□□□□ 0.15
LDLRP01130 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
LDLRP01130 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
LDLRP01130 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 AL645728.1-201ENST00000366221 2101 ntBASIC16■□□□□ 0.15
LDLRP01130 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16■□□□□ 0.15
LDLRP01130 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16■□□□□ 0.15
LDLRP01130 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LDLRP01130 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 AP002414.3-201ENST00000589352 1468 ntBASIC16■□□□□ 0.15
LDLRP01130 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16■□□□□ 0.15
LDLRP01130 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16■□□□□ 0.15
LDLRP01130 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16■□□□□ 0.15
LDLRP01130 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16■□□□□ 0.15
LDLRP01130 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16■□□□□ 0.15
LDLRP01130 AC092364.2-202ENST00000597012 1073 ntBASIC16■□□□□ 0.15
LDLRP01130 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
LDLRP01130 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16■□□□□ 0.15
LDLRP01130 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
LDLRP01130 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDLRP01130 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms