Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 AC010491.1-201ENST00000563101 2797 ntBASIC17.66■□□□□ 0.42
FOXN3O00409 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 ZNF259P1-201ENST00000407656 1365 ntBASIC17.66■□□□□ 0.42
FOXN3O00409 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXN3O00409 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.65■□□□□ 0.42
FOXN3O00409 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
FOXN3O00409 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
FOXN3O00409 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXN3O00409 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.65■□□□□ 0.42
FOXN3O00409 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXN3O00409 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.65■□□□□ 0.42
FOXN3O00409 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.65■□□□□ 0.42
FOXN3O00409 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.65■□□□□ 0.42
FOXN3O00409 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.65■□□□□ 0.42
FOXN3O00409 AC120114.3-201ENST00000611923 658 ntBASIC17.65■□□□□ 0.42
FOXN3O00409 AL513190.1-201ENST00000621254 727 ntBASIC17.65■□□□□ 0.42
FOXN3O00409 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 AL592424.1-201ENST00000563624 1536 ntBASIC17.65■□□□□ 0.42
FOXN3O00409 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
FOXN3O00409 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXN3O00409 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXN3O00409 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.65■□□□□ 0.42
FOXN3O00409 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.65■□□□□ 0.42
FOXN3O00409 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
FOXN3O00409 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
FOXN3O00409 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.64■□□□□ 0.42
FOXN3O00409 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
FOXN3O00409 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
FOXN3O00409 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
FOXN3O00409 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.42
FOXN3O00409 AC132872.4-202ENST00000622924 2756 ntBASIC17.64■□□□□ 0.41
FOXN3O00409 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXN3O00409 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXN3O00409 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
FOXN3O00409 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
FOXN3O00409 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXN3O00409 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.64■□□□□ 0.41
FOXN3O00409 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXN3O00409 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXN3O00409 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
FOXN3O00409 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXN3O00409 AC092865.6-201ENST00000642101 219 ntBASIC17.64■□□□□ 0.41
FOXN3O00409 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 AC022188.1-201ENST00000620960 1664 ntBASIC17.64■□□□□ 0.41
FOXN3O00409 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
FOXN3O00409 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
FOXN3O00409 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXN3O00409 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXN3O00409 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXN3O00409 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
FOXN3O00409 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms