Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 HCG4-201ENST00000418983 998 ntBASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 BASP1P1-201ENST00000430708 665 ntBASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC093520.2-201ENST00000561830 333 ntBASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 Z92544.3-201ENST00000624747 417 ntBASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.25■□□□□ 0.19
TMX2-CTNND1H3BSU7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SPDYE7P-202ENST00000420373 878 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 INGX-202ENST00000489074 768 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC069262.1-201ENST00000539058 672 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC243562.1-201ENST00000560672 389 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL135744.1-201ENST00000565098 629 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 MIR4745-201ENST00000577608 62 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC005498.2-205ENST00000593218 784 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 DBET-201ENST00000630918 3363 ntBASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.24■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC006449.5-201ENST00000610658 2098 ntBASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL353732.1-201ENST00000569618 1459 ntBASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms