Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 IGHV3-65-201ENST00000523210 341 ntBASIC13.4□□□□□ -0.26
FOXA2Q9Y261 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 AC008894.3-201ENST00000624324 3103 ntBASIC13.4□□□□□ -0.26
FOXA2Q9Y261 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 MRPL20P1-201ENST00000400819 433 ntBASIC13.39□□□□□ -0.27
FOXA2Q9Y261 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.39□□□□□ -0.27
FOXA2Q9Y261 AL590627.1-203ENST00000421194 1026 ntBASIC13.39□□□□□ -0.27
FOXA2Q9Y261 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 POU5F1P6-201ENST00000466990 990 ntBASIC13.39□□□□□ -0.27
FOXA2Q9Y261 AC108751.1-201ENST00000490852 363 ntBASIC13.39□□□□□ -0.27
FOXA2Q9Y261 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.39□□□□□ -0.27
FOXA2Q9Y261 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA2Q9Y261 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 WDR53-204ENST00000433160 887 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 AC108073.2-201ENST00000464002 357 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 RNA5SP415-201ENST00000517246 115 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 IGHV3-22-201ENST00000520721 359 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 MIR4751-201ENST00000578027 74 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 AC120114.3-201ENST00000611923 658 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms