Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 LINC01144-201ENST00000626198 1710 ntBASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 UPK3BP1-201ENST00000428678 509 ntBASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SAPCD2P3-201ENST00000455031 850 ntBASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 AC129492.6-201ENST00000611383 1305 ntBASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
POLR2J3Q9H1A7 GGT4P-201ENST00000623672 1708 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AL031731.1-201ENST00000642131 2094 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AL671710.1-201ENST00000610245 2349 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 HCG4P8-203ENST00000443049 980 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AC087641.1-201ENST00000557561 1021 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 CYP2A7P1-201ENST00000595391 815 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AC025062.2-201ENST00000605477 670 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AC107918.4-202ENST00000641623 219 ntBASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
POLR2J3Q9H1A7 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms