Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 AL845331.1-201ENST00000424978 1190 ntBASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 KRT17P6-201ENST00000453795 1220 ntBASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 MIR600HG-201ENST00000449175 5984 ntBASIC15.38■□□□□ 0.05
ZNF540Q8NDQ6 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 AC246785.2-201ENST00000432512 513 ntBASIC15.37■□□□□ 0.05
ZNF540Q8NDQ6 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms