Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 AL021920.2-201ENST00000624828 1351 ntBASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
DEPDC4Q8N2C3 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 FAM220CP-201ENST00000395253 831 ntBASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 AL662844.1-201ENST00000546340 181 ntBASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 REXO1L6P-202ENST00000619970 1078 ntBASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
DEPDC4Q8N2C3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
DEPDC4Q8N2C3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.46■□□□□ 0.06
DEPDC4Q8N2C3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
DEPDC4Q8N2C3 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
DEPDC4Q8N2C3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 DBET-201ENST00000630918 3363 ntBASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AL353593.2-201ENST00000602529 1483 ntBASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms