Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 AKAP8P1-201ENST00000434743 1349 ntBASIC16.12■□□□□ 0.17
VRK3Q8IV63 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VRK3Q8IV63 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK3Q8IV63 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 ACTG1P14-201ENST00000446382 1122 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 TIMM8BP1-201ENST00000452384 211 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 POU5F1P6-201ENST00000466990 990 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 MIR3687-2-201ENST00000577708 61 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 AC026120.1-201ENST00000611536 926 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 MIR3687-1-201ENST00000614492 61 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AC023511.2-201ENST00000618803 211 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AC055717.3-201ENST00000622967 595 ntBASIC16.11■□□□□ 0.17
VRK3Q8IV63 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK3Q8IV63 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VRK3Q8IV63 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 OR6D1P-203ENST00000641209 4860 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SPCS2P4-201ENST00000436160 681 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SPDYE11-202ENST00000450699 704 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 AC079140.1-201ENST00000508039 487 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 PRYP6-201ENST00000514804 343 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SPDYE9P-201ENST00000570642 692 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SPDYE10P-202ENST00000612005 668 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 SPDYE8P-202ENST00000612377 668 ntBASIC16.1■□□□□ 0.17
VRK3Q8IV63 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms