Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 MTDHP5-201ENST00000598980 586 ntBASIC16.31■□□□□ 0.2
VARSP26640 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VARSP26640 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.31■□□□□ 0.2
VARSP26640 REXO1L3P-201ENST00000622202 1288 ntBASIC16.31■□□□□ 0.2
VARSP26640 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VARSP26640 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.31■□□□□ 0.2
VARSP26640 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.31■□□□□ 0.2
VARSP26640 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VARSP26640 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.31■□□□□ 0.2
VARSP26640 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.31■□□□□ 0.2
VARSP26640 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VARSP26640 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.3■□□□□ 0.2
VARSP26640 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.3■□□□□ 0.2
VARSP26640 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 AC098799.1-201ENST00000504752 800 ntBASIC16.3■□□□□ 0.2
VARSP26640 RNA5SP415-201ENST00000517246 115 ntBASIC16.3■□□□□ 0.2
VARSP26640 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.3■□□□□ 0.2
VARSP26640 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.3■□□□□ 0.2
VARSP26640 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VARSP26640 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VARSP26640 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VARSP26640 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VARSP26640 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.29■□□□□ 0.2
VARSP26640 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VARSP26640 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VARSP26640 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.29■□□□□ 0.2
VARSP26640 TOP3BP1-201ENST00000420768 1380 ntBASIC16.29■□□□□ 0.2
VARSP26640 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VARSP26640 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.29■□□□□ 0.2
VARSP26640 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.29■□□□□ 0.2
VARSP26640 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VARSP26640 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VARSP26640 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VARSP26640 YBX2P1-201ENST00000394192 760 ntBASIC16.29■□□□□ 0.2
VARSP26640 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.29■□□□□ 0.2
VARSP26640 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC16.29■□□□□ 0.2
VARSP26640 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
VARSP26640 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.29■□□□□ 0.2
VARSP26640 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.29■□□□□ 0.2
VARSP26640 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.29■□□□□ 0.2
VARSP26640 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.29■□□□□ 0.2
VARSP26640 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.29■□□□□ 0.2
VARSP26640 AC010327.4-202ENST00000591484 748 ntBASIC16.29■□□□□ 0.2
VARSP26640 AL355385.1-201ENST00000606123 409 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms