Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
ABCA1O95477 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC13.88□□□□□ -0.19
ABCA1O95477 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.88□□□□□ -0.19
ABCA1O95477 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.88□□□□□ -0.19
ABCA1O95477 IGHV3-62-201ENST00000520057 340 ntBASIC13.88□□□□□ -0.19
ABCA1O95477 AC109635.5-201ENST00000533593 962 ntBASIC13.88□□□□□ -0.19
ABCA1O95477 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
ABCA1O95477 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.88□□□□□ -0.19
ABCA1O95477 AC005412.3-201ENST00000580309 715 ntBASIC13.88□□□□□ -0.19
ABCA1O95477 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.88□□□□□ -0.19
ABCA1O95477 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA1O95477 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
ABCA1O95477 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
ABCA1O95477 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 AL512638.1-201ENST00000457493 794 ntBASIC13.87□□□□□ -0.19
ABCA1O95477 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.87□□□□□ -0.19
ABCA1O95477 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 MIR3909-201ENST00000579518 119 ntBASIC13.87□□□□□ -0.19
ABCA1O95477 AC027307.2-201ENST00000591252 911 ntBASIC13.87□□□□□ -0.19
ABCA1O95477 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.87□□□□□ -0.19
ABCA1O95477 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
ABCA1O95477 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.87□□□□□ -0.19
ABCA1O95477 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
ABCA1O95477 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
ABCA1O95477 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
ABCA1O95477 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.87□□□□□ -0.19
ABCA1O95477 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
ABCA1O95477 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.87□□□□□ -0.19
ABCA1O95477 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.87□□□□□ -0.19
ABCA1O95477 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.87□□□□□ -0.19
ABCA1O95477 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.87□□□□□ -0.19
ABCA1O95477 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.87□□□□□ -0.19
ABCA1O95477 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
ABCA1O95477 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ABCA1O95477 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.86□□□□□ -0.19
ABCA1O95477 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ABCA1O95477 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
ABCA1O95477 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
ABCA1O95477 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA1O95477 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms