Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.5■□□□□ 0.87
CACNA1FO60840 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.5■□□□□ 0.87
CACNA1FO60840 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.5■□□□□ 0.87
CACNA1FO60840 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.5■□□□□ 0.87
CACNA1FO60840 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.5■□□□□ 0.87
CACNA1FO60840 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CACNA1FO60840 AL118508.1-201ENST00000613502 2345 ntBASIC20.49■□□□□ 0.87
CACNA1FO60840 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.49■□□□□ 0.87
CACNA1FO60840 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.49■□□□□ 0.87
CACNA1FO60840 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CACNA1FO60840 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.49■□□□□ 0.87
CACNA1FO60840 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 MIR661-201ENST00000384842 89 ntBASIC20.49■□□□□ 0.87
CACNA1FO60840 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 SPDYE17-201ENST00000412399 783 ntBASIC20.49■□□□□ 0.87
CACNA1FO60840 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 AL589739.1-201ENST00000607720 493 ntBASIC20.49■□□□□ 0.87
CACNA1FO60840 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.49■□□□□ 0.87
CACNA1FO60840 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1FO60840 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.49■□□□□ 0.87
CACNA1FO60840 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.49■□□□□ 0.87
CACNA1FO60840 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 AC004987.2-201ENST00000395959 1148 ntBASIC20.48■□□□□ 0.87
CACNA1FO60840 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.48■□□□□ 0.87
CACNA1FO60840 NME4-207ENST00000450036 985 ntTSL 3 BASIC20.48■□□□□ 0.87
CACNA1FO60840 HNRNPUP1-201ENST00000554987 333 ntBASIC20.48■□□□□ 0.87
CACNA1FO60840 AC092337.1-201ENST00000568699 1129 ntBASIC20.48■□□□□ 0.87
CACNA1FO60840 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.48■□□□□ 0.87
CACNA1FO60840 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 BTBD7P1-201ENST00000447253 1453 ntBASIC20.48■□□□□ 0.87
CACNA1FO60840 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 HAUS4P1-201ENST00000406739 1145 ntBASIC20.48■□□□□ 0.87
CACNA1FO60840 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1FO60840 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.48■□□□□ 0.87
CACNA1FO60840 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CACNA1FO60840 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 BNIP3P1-202ENST00000550043 1585 ntBASIC20.48■□□□□ 0.87
CACNA1FO60840 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1FO60840 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 LTB4R2-202ENST00000528054 3092 ntBASIC20.47■□□□□ 0.87
CACNA1FO60840 AC092364.2-201ENST00000596710 2692 ntBASIC20.47■□□□□ 0.87
CACNA1FO60840 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CACNA1FO60840 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms