Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.58□□□□□ -0.08
LMX1BO60663 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LMX1BO60663 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMX1BO60663 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.57□□□□□ -0.08
LMX1BO60663 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.57□□□□□ -0.08
LMX1BO60663 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.57□□□□□ -0.08
LMX1BO60663 AC108751.1-201ENST00000490852 363 ntBASIC14.57□□□□□ -0.08
LMX1BO60663 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
LMX1BO60663 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.57□□□□□ -0.08
LMX1BO60663 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.57□□□□□ -0.08
LMX1BO60663 AC005829.1-201ENST00000570002 483 ntBASIC14.57□□□□□ -0.08
LMX1BO60663 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.57□□□□□ -0.08
LMX1BO60663 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.57□□□□□ -0.08
LMX1BO60663 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
LMX1BO60663 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
LMX1BO60663 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 LINC00554-201ENST00000564841 3011 ntBASIC14.57□□□□□ -0.08
LMX1BO60663 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.57□□□□□ -0.08
LMX1BO60663 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMX1BO60663 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LMX1BO60663 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.56□□□□□ -0.08
LMX1BO60663 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LMX1BO60663 GGT3P-204ENST00000453783 1664 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 AL512652.2-201ENST00000625156 1716 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LMX1BO60663 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LMX1BO60663 AC024909.3-201ENST00000611513 2257 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LMX1BO60663 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC14.56□□□□□ -0.08
LMX1BO60663 AP006288.1-201ENST00000446065 395 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.56□□□□□ -0.08
LMX1BO60663 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
LMX1BO60663 AC136632.2-201ENST00000512891 861 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.56□□□□□ -0.08
LMX1BO60663 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.56□□□□□ -0.08
LMX1BO60663 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
LMX1BO60663 SNHG9-202ENST00000564014 471 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.56□□□□□ -0.08
LMX1BO60663 AL596442.2-201ENST00000610240 980 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LMX1BO60663 KRT18P28-201ENST00000453838 1332 ntBASIC14.56□□□□□ -0.08
LMX1BO60663 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMX1BO60663 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.56□□□□□ -0.08
LMX1BO60663 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms