Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
FOXN3O00409 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXN3O00409 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXN3O00409 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXN3O00409 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXN3O00409 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.68■□□□□ 0.42
FOXN3O00409 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.68■□□□□ 0.42
FOXN3O00409 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.68■□□□□ 0.42
FOXN3O00409 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
FOXN3O00409 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
FOXN3O00409 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.68■□□□□ 0.42
FOXN3O00409 AL365203.3-201ENST00000609742 2057 ntBASIC17.68■□□□□ 0.42
FOXN3O00409 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXN3O00409 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
FOXN3O00409 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.68■□□□□ 0.42
FOXN3O00409 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
FOXN3O00409 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.68■□□□□ 0.42
FOXN3O00409 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
FOXN3O00409 AC024909.3-201ENST00000611513 2257 ntBASIC17.68■□□□□ 0.42
FOXN3O00409 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.68■□□□□ 0.42
FOXN3O00409 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.68■□□□□ 0.42
FOXN3O00409 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXN3O00409 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
FOXN3O00409 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXN3O00409 CICP6-201ENST00000457191 2729 ntBASIC17.67■□□□□ 0.42
FOXN3O00409 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXN3O00409 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 AC026396.1-201ENST00000419388 421 ntBASIC17.67■□□□□ 0.42
FOXN3O00409 AC140658.5-201ENST00000438532 169 ntBASIC17.67■□□□□ 0.42
FOXN3O00409 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.67■□□□□ 0.42
FOXN3O00409 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.67■□□□□ 0.42
FOXN3O00409 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXN3O00409 AC109635.5-201ENST00000533593 962 ntBASIC17.67■□□□□ 0.42
FOXN3O00409 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.67■□□□□ 0.42
FOXN3O00409 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXN3O00409 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXN3O00409 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXN3O00409 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
FOXN3O00409 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXN3O00409 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXN3O00409 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXN3O00409 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 AL603832.2-201ENST00000566195 2125 ntBASIC17.66■□□□□ 0.42
FOXN3O00409 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 AC007950.2-201ENST00000615045 2347 ntBASIC17.66■□□□□ 0.42
FOXN3O00409 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
FOXN3O00409 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 AC092919.2-201ENST00000623631 1645 ntBASIC17.66■□□□□ 0.42
FOXN3O00409 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXN3O00409 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 AC106730.1-201ENST00000566722 1090 ntBASIC17.66■□□□□ 0.42
FOXN3O00409 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.66■□□□□ 0.42
FOXN3O00409 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.66■□□□□ 0.42
FOXN3O00409 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
FOXN3O00409 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.66■□□□□ 0.42
FOXN3O00409 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXN3O00409 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms