Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 AP002490.2-201ENST00000524791 560 ntBASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 AL021920.2-201ENST00000624828 1351 ntBASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC39Q9UFE4 AC243591.1-201ENST00000452967 1364 ntBASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 AC021087.4-201ENST00000563761 564 ntBASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 AC004706.3-202ENST00000621574 984 ntBASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC39Q9UFE4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms