Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.72■□□□□ 0.43
CNTN3Q9P232 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 UBALD1-205ENST00000590891 2641 ntBASIC17.71■□□□□ 0.43
CNTN3Q9P232 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 MIR943-201ENST00000401286 94 ntBASIC17.71■□□□□ 0.43
CNTN3Q9P232 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 AL158211.3-201ENST00000607385 239 ntBASIC17.71■□□□□ 0.43
CNTN3Q9P232 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.71■□□□□ 0.43
CNTN3Q9P232 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNTN3Q9P232 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 AC055876.3-201ENST00000431496 288 ntBASIC17.7■□□□□ 0.42
CNTN3Q9P232 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 RNA5SP410-201ENST00000516285 106 ntBASIC17.7■□□□□ 0.42
CNTN3Q9P232 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 AC138649.4-201ENST00000612222 287 ntBASIC17.7■□□□□ 0.42
CNTN3Q9P232 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CNTN3Q9P232 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNTN3Q9P232 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 AC069120.2-201ENST00000524091 540 ntBASIC17.69■□□□□ 0.42
CNTN3Q9P232 AC003101.2-201ENST00000612557 442 ntBASIC17.69■□□□□ 0.42
CNTN3Q9P232 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNTN3Q9P232 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.69■□□□□ 0.42
CNTN3Q9P232 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms