Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 AC011270.2-201ENST00000624293 2550 ntBASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRRC40Q9H9A6 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 PMS2P4-201ENST00000412466 1052 ntBASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 AC096734.2-201ENST00000562054 433 ntBASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 AC010507.1-201ENST00000633895 436 ntBASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.81■□□□□ 0.28
LRRC40Q9H9A6 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 AC022188.1-201ENST00000620960 1664 ntBASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LRRC40Q9H9A6 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRRC40Q9H9A6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms