Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 PTCHD3P3-201ENST00000403073 906 ntBASIC17.89■□□□□ 0.45
CCDC42Q96M95 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 AC004706.3-202ENST00000621574 984 ntBASIC17.89■□□□□ 0.45
CCDC42Q96M95 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
CCDC42Q96M95 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC42Q96M95 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.88■□□□□ 0.45
CCDC42Q96M95 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 FOSL1P1-201ENST00000511041 816 ntBASIC17.88■□□□□ 0.45
CCDC42Q96M95 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 CYP2A7P1-201ENST00000595391 815 ntBASIC17.88■□□□□ 0.45
CCDC42Q96M95 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC42Q96M95 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC42Q96M95 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 PMS2P1-201ENST00000431037 1228 ntBASIC17.87■□□□□ 0.45
CCDC42Q96M95 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 AL732292.2-201ENST00000609649 430 ntBASIC17.87■□□□□ 0.45
CCDC42Q96M95 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms