Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE4Q8N205 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE4Q8N205 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE4Q8N205 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE4Q8N205 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.41■□□□□ 0.86
SYNE4Q8N205 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE4Q8N205 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE4Q8N205 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.4■□□□□ 0.86
SYNE4Q8N205 AL589987.1-201ENST00000453380 819 ntBASIC20.4■□□□□ 0.86
SYNE4Q8N205 INE1-201ENST00000456273 945 ntBASIC20.4■□□□□ 0.86
SYNE4Q8N205 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SYNE4Q8N205 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.4■□□□□ 0.86
SYNE4Q8N205 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SYNE4Q8N205 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SYNE4Q8N205 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SYNE4Q8N205 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SYNE4Q8N205 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SYNE4Q8N205 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 SPDYE19P-201ENST00000338590 713 ntBASIC20.39■□□□□ 0.85
SYNE4Q8N205 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SYNE4Q8N205 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.39■□□□□ 0.85
SYNE4Q8N205 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 ZNF890P-202ENST00000530367 1156 ntBASIC20.38■□□□□ 0.85
SYNE4Q8N205 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.38■□□□□ 0.85
SYNE4Q8N205 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SYNE4Q8N205 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms