Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.59■■□□□ 1.05
USP54Q70EL1 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
USP54Q70EL1 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC21.59■■□□□ 1.05
USP54Q70EL1 AC000095.1-201ENST00000603208 874 ntBASIC21.59■■□□□ 1.05
USP54Q70EL1 AL606495.2-201ENST00000605867 535 ntBASIC21.59■■□□□ 1.05
USP54Q70EL1 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.59■■□□□ 1.05
USP54Q70EL1 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP54Q70EL1 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP54Q70EL1 RNF216P1-203ENST00000404404 2427 ntBASIC21.58■■□□□ 1.05
USP54Q70EL1 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC21.58■■□□□ 1.05
USP54Q70EL1 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USP54Q70EL1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP54Q70EL1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.58■■□□□ 1.05
USP54Q70EL1 AP001282.1-201ENST00000531301 1499 ntBASIC21.58■■□□□ 1.05
USP54Q70EL1 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC21.58■■□□□ 1.05
USP54Q70EL1 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
USP54Q70EL1 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USP54Q70EL1 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
USP54Q70EL1 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC21.58■■□□□ 1.05
USP54Q70EL1 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC21.58■■□□□ 1.05
USP54Q70EL1 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
USP54Q70EL1 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.58■■□□□ 1.05
USP54Q70EL1 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.58■■□□□ 1.05
USP54Q70EL1 BNIP3P1-202ENST00000550043 1585 ntBASIC21.58■■□□□ 1.05
USP54Q70EL1 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.58■■□□□ 1.05
USP54Q70EL1 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
USP54Q70EL1 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
USP54Q70EL1 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
USP54Q70EL1 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
USP54Q70EL1 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC21.58■■□□□ 1.04
USP54Q70EL1 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP54Q70EL1 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.58■■□□□ 1.04
USP54Q70EL1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP54Q70EL1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC21.58■■□□□ 1.04
USP54Q70EL1 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP54Q70EL1 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
USP54Q70EL1 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
USP54Q70EL1 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.57■■□□□ 1.04
USP54Q70EL1 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 COX11-210ENST00000639671 696 ntBASIC21.57■■□□□ 1.04
USP54Q70EL1 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.57■■□□□ 1.04
USP54Q70EL1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
USP54Q70EL1 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
USP54Q70EL1 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
USP54Q70EL1 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP54Q70EL1 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
USP54Q70EL1 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC21.56■■□□□ 1.04
USP54Q70EL1 RN7SL399P-201ENST00000471648 279 ntBASIC21.56■■□□□ 1.04
USP54Q70EL1 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC21.56■■□□□ 1.04
USP54Q70EL1 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC21.56■■□□□ 1.04
USP54Q70EL1 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC21.56■■□□□ 1.04
USP54Q70EL1 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC21.56■■□□□ 1.04
USP54Q70EL1 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.56■■□□□ 1.04
USP54Q70EL1 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.56■■□□□ 1.04
USP54Q70EL1 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC21.56■■□□□ 1.04
USP54Q70EL1 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC21.56■■□□□ 1.04
USP54Q70EL1 NAA38-206ENST00000576384 424 ntTSL 2 BASIC21.56■■□□□ 1.04
USP54Q70EL1 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC21.56■■□□□ 1.04
USP54Q70EL1 AC233724.13-201ENST00000598383 410 ntBASIC21.56■■□□□ 1.04
USP54Q70EL1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP54Q70EL1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms