Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 AL049757.1-201ENST00000616842 1596 ntBASIC17.28■□□□□ 0.36
IRX4P78413 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.28■□□□□ 0.36
IRX4P78413 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 MRPL20P1-201ENST00000400819 433 ntBASIC17.28■□□□□ 0.36
IRX4P78413 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.28■□□□□ 0.36
IRX4P78413 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.28■□□□□ 0.36
IRX4P78413 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.28■□□□□ 0.36
IRX4P78413 ACTG1P14-201ENST00000446382 1122 ntBASIC17.28■□□□□ 0.36
IRX4P78413 SIGLEC30P-201ENST00000455569 941 ntBASIC17.28■□□□□ 0.36
IRX4P78413 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
IRX4P78413 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.28■□□□□ 0.36
IRX4P78413 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.28■□□□□ 0.36
IRX4P78413 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
IRX4P78413 AL662844.4-201ENST00000606367 2838 ntBASIC17.28■□□□□ 0.36
IRX4P78413 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
IRX4P78413 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.28■□□□□ 0.36
IRX4P78413 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
IRX4P78413 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
IRX4P78413 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.27■□□□□ 0.36
IRX4P78413 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.27■□□□□ 0.36
IRX4P78413 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
IRX4P78413 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.27■□□□□ 0.36
IRX4P78413 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
IRX4P78413 AC074386.1-202ENST00000463561 864 ntBASIC17.27■□□□□ 0.36
IRX4P78413 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.27■□□□□ 0.36
IRX4P78413 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
IRX4P78413 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
IRX4P78413 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
IRX4P78413 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
IRX4P78413 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.27■□□□□ 0.36
IRX4P78413 AC025580.3-201ENST00000617932 1424 ntBASIC17.27■□□□□ 0.35
IRX4P78413 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.27■□□□□ 0.35
IRX4P78413 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
IRX4P78413 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.26■□□□□ 0.35
IRX4P78413 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
IRX4P78413 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.26■□□□□ 0.35
IRX4P78413 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
IRX4P78413 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
IRX4P78413 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.26■□□□□ 0.35
IRX4P78413 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.26■□□□□ 0.35
IRX4P78413 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.26■□□□□ 0.35
IRX4P78413 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
IRX4P78413 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.26■□□□□ 0.35
IRX4P78413 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms