Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.61■□□□□ 0.09
COL5A1P20908 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 AL442647.2-201ENST00000429864 857 ntBASIC15.61■□□□□ 0.09
COL5A1P20908 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
COL5A1P20908 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.6■□□□□ 0.09
COL5A1P20908 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
COL5A1P20908 FO393414.2-201ENST00000405153 598 ntBASIC15.6■□□□□ 0.09
COL5A1P20908 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 HIST3H2BA-201ENST00000436555 524 ntBASIC15.6■□□□□ 0.09
COL5A1P20908 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.6■□□□□ 0.09
COL5A1P20908 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.6■□□□□ 0.09
COL5A1P20908 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.6■□□□□ 0.09
COL5A1P20908 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.6■□□□□ 0.09
COL5A1P20908 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.6■□□□□ 0.09
COL5A1P20908 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
COL5A1P20908 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.6■□□□□ 0.09
COL5A1P20908 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.6■□□□□ 0.09
COL5A1P20908 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.6■□□□□ 0.09
COL5A1P20908 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.6■□□□□ 0.09
COL5A1P20908 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL5A1P20908 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 AL355994.2-201ENST00000447882 704 ntBASIC15.59■□□□□ 0.09
COL5A1P20908 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.59■□□□□ 0.09
COL5A1P20908 AL158212.4-201ENST00000624062 1286 ntBASIC15.59■□□□□ 0.09
COL5A1P20908 AL033527.5-201ENST00000641382 801 ntBASIC15.59■□□□□ 0.09
COL5A1P20908 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 AL136982.4-201ENST00000437689 1740 ntBASIC15.59■□□□□ 0.09
COL5A1P20908 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
COL5A1P20908 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.59■□□□□ 0.09
COL5A1P20908 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL5A1P20908 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms