Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 CICP6-201ENST00000457191 2729 ntBASIC16.28■□□□□ 0.2
VPS4BO75351 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 AL365203.3-201ENST00000609742 2057 ntBASIC16.28■□□□□ 0.2
VPS4BO75351 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4BO75351 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4BO75351 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4BO75351 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.27■□□□□ 0.2
VPS4BO75351 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4BO75351 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4BO75351 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4BO75351 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 AL590787.1-201ENST00000568856 1315 ntBASIC16.27■□□□□ 0.2
VPS4BO75351 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4BO75351 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 HTR5BP-201ENST00000430851 1154 ntBASIC16.27■□□□□ 0.2
VPS4BO75351 METTL21AP1-201ENST00000438852 635 ntBASIC16.27■□□□□ 0.2
VPS4BO75351 UNC93B6-202ENST00000528242 690 ntBASIC16.27■□□□□ 0.2
VPS4BO75351 AC012640.2-201ENST00000561606 901 ntBASIC16.27■□□□□ 0.2
VPS4BO75351 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4BO75351 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4BO75351 AL139288.1-201ENST00000623748 933 ntBASIC16.27■□□□□ 0.2
VPS4BO75351 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4BO75351 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4BO75351 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS4BO75351 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS4BO75351 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS4BO75351 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS4BO75351 GGT3P-204ENST00000453783 1664 ntBASIC16.27■□□□□ 0.19
VPS4BO75351 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4BO75351 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS4BO75351 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
VPS4BO75351 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VPS4BO75351 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VPS4BO75351 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4BO75351 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
VPS4BO75351 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
VPS4BO75351 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VPS4BO75351 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 TOP3BP1-201ENST00000420768 1380 ntBASIC16.26■□□□□ 0.19
VPS4BO75351 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS4BO75351 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 AC023274.1-201ENST00000418278 595 ntBASIC16.26■□□□□ 0.19
VPS4BO75351 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 PRYP5-201ENST00000451909 266 ntBASIC16.26■□□□□ 0.19
VPS4BO75351 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS4BO75351 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 AC092364.2-202ENST00000597012 1073 ntBASIC16.26■□□□□ 0.19
VPS4BO75351 AL353135.1-201ENST00000606729 504 ntBASIC16.26■□□□□ 0.19
VPS4BO75351 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4BO75351 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4BO75351 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VPS4BO75351 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms