Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 AC112504.1-201ENST00000623415 1841 ntBASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC28BQ9BUN5 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 GRK6P1-201ENST00000400595 1711 ntBASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 CICP13-201ENST00000422015 2789 ntBASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 AC114341.1-201ENST00000618070 349 ntBASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 PCGF3-213ENST00000620529 1899 ntBASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
CCDC28BQ9BUN5 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 AC016734.2-201ENST00000624325 1377 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 NSUN5P1-202ENST00000421140 1535 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 NSUN5P2-203ENST00000457352 1529 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 LINC02447-202ENST00000501888 2146 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 ABCD1P5-201ENST00000445663 754 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 KRT17P6-201ENST00000453795 1220 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 AC138035.3-201ENST00000622706 2791 ntBASIC16.15■□□□□ 0.18
CCDC28BQ9BUN5 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.14■□□□□ 0.18
CCDC28BQ9BUN5 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC28BQ9BUN5 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.14■□□□□ 0.18
CCDC28BQ9BUN5 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC28BQ9BUN5 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC28BQ9BUN5 REXO1L8P-201ENST00000604378 1897 ntBASIC16.14■□□□□ 0.17
CCDC28BQ9BUN5 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
CCDC28BQ9BUN5 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28BQ9BUN5 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28BQ9BUN5 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC28BQ9BUN5 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms