Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VPS39Q96JC1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS39Q96JC1 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
VPS39Q96JC1 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS39Q96JC1 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS39Q96JC1 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS39Q96JC1 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 CYP2A7P1-201ENST00000595391 815 ntBASIC16.65■□□□□ 0.26
VPS39Q96JC1 GGTLC5P-201ENST00000617623 998 ntBASIC16.65■□□□□ 0.26
VPS39Q96JC1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS39Q96JC1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS39Q96JC1 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.64■□□□□ 0.26
VPS39Q96JC1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VPS39Q96JC1 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.64■□□□□ 0.26
VPS39Q96JC1 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 RPS15P9-201ENST00000494093 319 ntBASIC16.64■□□□□ 0.25
VPS39Q96JC1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 AP001350.2-201ENST00000625104 1094 ntBASIC16.64■□□□□ 0.25
VPS39Q96JC1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 AL596087.1-201ENST00000400979 1969 ntBASIC16.64■□□□□ 0.25
VPS39Q96JC1 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS39Q96JC1 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS39Q96JC1 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AL162727.3-201ENST00000635661 2787 ntBASIC16.63■□□□□ 0.25
VPS39Q96JC1 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 AL353732.1-201ENST00000569618 1459 ntBASIC16.63■□□□□ 0.25
VPS39Q96JC1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS39Q96JC1 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS39Q96JC1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms