Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 AC073621.1-201ENST00000392730 636 ntBASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 KRT18P27-201ENST00000427733 1299 ntBASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ATG4AQ8WYN0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
ATG4AQ8WYN0 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ATG4AQ8WYN0 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 DUSP5P1-201ENST00000441325 1139 ntBASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.2■□□□□ 0.34
ATG4AQ8WYN0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 AC087641.1-201ENST00000557561 1021 ntBASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 IFNL4P1-201ENST00000607083 540 ntBASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 AL596257.1-201ENST00000641463 2694 ntBASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ATG4AQ8WYN0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
ATG4AQ8WYN0 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms