Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 OR8S1-201ENST00000310194 1080 ntBASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 HLA-V-201ENST00000429037 534 ntBASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 CRB3P1-201ENST00000449338 276 ntBASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.91■□□□□ 0.62
SH3RF1Q7Z6J0 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 AC026691.1-201ENST00000602502 2017 ntBASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 AL662844.4-201ENST00000606367 2838 ntBASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 ME2P1-201ENST00000426028 1970 ntBASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.9■□□□□ 0.62
SH3RF1Q7Z6J0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
SH3RF1Q7Z6J0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SH3RF1Q7Z6J0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.89■□□□□ 0.62
SH3RF1Q7Z6J0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
SH3RF1Q7Z6J0 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
SH3RF1Q7Z6J0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 SPDYE14P-201ENST00000442619 822 ntBASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 AC097493.3-201ENST00000509725 367 ntBASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 RARRES2P8-201ENST00000566335 367 ntBASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms