Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 BOLA2P3-201ENST00000404566 256 ntBASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC88AQ3V6T2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 FTH1P14-201ENST00000482930 551 ntBASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC88AQ3V6T2 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AC098859.1-201ENST00000502915 1238 ntBASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 RHOQP1-201ENST00000555758 579 ntBASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AL645728.1-201ENST00000366221 2101 ntBASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 MPDU1-223ENST00000582151 728 ntBASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 AL603756.1-201ENST00000606511 2163 ntBASIC19.94■□□□□ 0.78
CCDC88AQ3V6T2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AC005915.1-201ENST00000624912 2018 ntBASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms