Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.72■□□□□ 0.11
LIM2P55344 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.72■□□□□ 0.11
LIM2P55344 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.72■□□□□ 0.11
LIM2P55344 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.72■□□□□ 0.11
LIM2P55344 MTDHP5-201ENST00000598980 586 ntBASIC15.72■□□□□ 0.11
LIM2P55344 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.72■□□□□ 0.11
LIM2P55344 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LIM2P55344 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.72■□□□□ 0.11
LIM2P55344 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.72■□□□□ 0.11
LIM2P55344 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 GPAA1P2-202ENST00000606848 1787 ntBASIC15.72■□□□□ 0.11
LIM2P55344 PCDHA1-201ENST00000378133 2726 ntBASIC15.72■□□□□ 0.11
LIM2P55344 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LIM2P55344 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIM2P55344 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LIM2P55344 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 GGT3P-204ENST00000453783 1664 ntBASIC15.71■□□□□ 0.11
LIM2P55344 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.71■□□□□ 0.11
LIM2P55344 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LIM2P55344 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 YBX2P1-201ENST00000394192 760 ntBASIC15.71■□□□□ 0.11
LIM2P55344 AC002056.1-201ENST00000395613 760 ntBASIC15.71■□□□□ 0.11
LIM2P55344 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.71■□□□□ 0.11
LIM2P55344 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.71■□□□□ 0.11
LIM2P55344 AC091812.2-201ENST00000619081 385 ntBASIC15.71■□□□□ 0.11
LIM2P55344 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.71■□□□□ 0.11
LIM2P55344 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.71■□□□□ 0.11
LIM2P55344 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.71■□□□□ 0.11
LIM2P55344 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
LIM2P55344 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LIM2P55344 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIM2P55344 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.71■□□□□ 0.1
LIM2P55344 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.71■□□□□ 0.1
LIM2P55344 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
LIM2P55344 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.7■□□□□ 0.1
LIM2P55344 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.7■□□□□ 0.1
LIM2P55344 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.7■□□□□ 0.1
LIM2P55344 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.7■□□□□ 0.1
LIM2P55344 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.7■□□□□ 0.1
LIM2P55344 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LIM2P55344 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.7■□□□□ 0.1
LIM2P55344 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.7■□□□□ 0.1
LIM2P55344 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms