Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AP000867.4-201ENST00000641616 219 ntBASIC16.71■□□□□ 0.27
PTPN4P29074 LINC02228-204ENST00000642115 2962 ntBASIC16.71■□□□□ 0.27
PTPN4P29074 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PTPN4P29074 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PTPN4P29074 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.71■□□□□ 0.26
PTPN4P29074 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 AL391256.1-201ENST00000443260 1855 ntBASIC16.7■□□□□ 0.26
PTPN4P29074 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
PTPN4P29074 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
PTPN4P29074 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN4P29074 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.7■□□□□ 0.26
PTPN4P29074 IGHV3-22-201ENST00000520721 359 ntBASIC16.7■□□□□ 0.26
PTPN4P29074 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.7■□□□□ 0.26
PTPN4P29074 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.7■□□□□ 0.26
PTPN4P29074 AC145285.3-201ENST00000564603 959 ntBASIC16.7■□□□□ 0.26
PTPN4P29074 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
PTPN4P29074 AC139530.3-201ENST00000620344 690 ntBASIC16.7■□□□□ 0.26
PTPN4P29074 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PTPN4P29074 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.7■□□□□ 0.26
PTPN4P29074 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PTPN4P29074 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN4P29074 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN4P29074 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
PTPN4P29074 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN4P29074 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN4P29074 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 AC096633.1-201ENST00000422446 749 ntBASIC16.69■□□□□ 0.26
PTPN4P29074 AC002558.1-201ENST00000488906 803 ntBASIC16.69■□□□□ 0.26
PTPN4P29074 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.69■□□□□ 0.26
PTPN4P29074 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.69■□□□□ 0.26
PTPN4P29074 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 AC092865.5-201ENST00000545435 363 ntBASIC16.69■□□□□ 0.26
PTPN4P29074 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.69■□□□□ 0.26
PTPN4P29074 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.69■□□□□ 0.26
PTPN4P29074 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.69■□□□□ 0.26
PTPN4P29074 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 MTDHP4-201ENST00000600287 670 ntBASIC16.69■□□□□ 0.26
PTPN4P29074 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 AC008735.5-201ENST00000623544 497 ntBASIC16.69■□□□□ 0.26
PTPN4P29074 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PTPN4P29074 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PTPN4P29074 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.69■□□□□ 0.26
PTPN4P29074 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 AC104109.2-201ENST00000602919 1418 ntBASIC16.69■□□□□ 0.26
PTPN4P29074 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTPN4P29074 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms