Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGA1P17096 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.04■□□□□ 0.32
HMGA1P17096 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGA1P17096 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
HMGA1P17096 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.04■□□□□ 0.32
HMGA1P17096 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HMGA1P17096 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGA1P17096 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGA1P17096 AC080080.1-201ENST00000625121 2420 ntBASIC17.04■□□□□ 0.32
HMGA1P17096 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGA1P17096 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGA1P17096 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 SPDYE17-201ENST00000412399 783 ntBASIC17.03■□□□□ 0.32
HMGA1P17096 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGA1P17096 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGA1P17096 CRB3P1-201ENST00000449338 276 ntBASIC17.03■□□□□ 0.32
HMGA1P17096 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 ZNF890P-202ENST00000530367 1156 ntBASIC17.03■□□□□ 0.32
HMGA1P17096 AL512361.1-201ENST00000554200 418 ntBASIC17.03■□□□□ 0.32
HMGA1P17096 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.03■□□□□ 0.32
HMGA1P17096 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGA1P17096 AC004840.1-201ENST00000636359 365 ntBASIC17.03■□□□□ 0.32
HMGA1P17096 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGA1P17096 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HMGA1P17096 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGA1P17096 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 U82695.1-201ENST00000635752 1889 ntBASIC17.03■□□□□ 0.32
HMGA1P17096 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGA1P17096 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
HMGA1P17096 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGA1P17096 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGA1P17096 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGA1P17096 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HMGA1P17096 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HMGA1P17096 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGA1P17096 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGA1P17096 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGA1P17096 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HMGA1P17096 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGA1P17096 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms