Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A1P02462 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A1P02462 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A1P02462 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A1P02462 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.95■□□□□ 0.78
COL4A1P02462 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.95■□□□□ 0.78
COL4A1P02462 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 AC012313.1-201ENST00000593393 3059 ntBASIC19.94■□□□□ 0.78
COL4A1P02462 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL4A1P02462 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 MIR4259-201ENST00000584466 101 ntBASIC19.94■□□□□ 0.78
COL4A1P02462 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.94■□□□□ 0.78
COL4A1P02462 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
COL4A1P02462 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC19.94■□□□□ 0.78
COL4A1P02462 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC19.94■□□□□ 0.78
COL4A1P02462 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A1P02462 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.94■□□□□ 0.78
COL4A1P02462 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A1P02462 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
COL4A1P02462 AL158212.4-201ENST00000624062 1286 ntBASIC19.94■□□□□ 0.78
COL4A1P02462 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL4A1P02462 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A1P02462 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A1P02462 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
COL4A1P02462 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL4A1P02462 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A1P02462 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A1P02462 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A1P02462 TTTY23B-201ENST00000442790 549 ntBASIC19.93■□□□□ 0.78
COL4A1P02462 GPR53P-205ENST00000457298 1084 ntBASIC19.93■□□□□ 0.78
COL4A1P02462 USP32P1-208ENST00000506594 1164 ntBASIC19.93■□□□□ 0.78
COL4A1P02462 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.93■□□□□ 0.78
COL4A1P02462 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.93■□□□□ 0.78
COL4A1P02462 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC19.93■□□□□ 0.78
COL4A1P02462 AC074044.1-201ENST00000609673 707 ntBASIC19.93■□□□□ 0.78
COL4A1P02462 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A1P02462 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A1P02462 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
COL4A1P02462 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A1P02462 AL139010.1-201ENST00000454878 894 ntBASIC19.92■□□□□ 0.78
COL4A1P02462 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.92■□□□□ 0.78
COL4A1P02462 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A1P02462 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.78
COL4A1P02462 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
COL4A1P02462 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
COL4A1P02462 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
COL4A1P02462 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A1P02462 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A1P02462 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC19.91■□□□□ 0.78
COL4A1P02462 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.91■□□□□ 0.78
COL4A1P02462 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
COL4A1P02462 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC19.91■□□□□ 0.78
COL4A1P02462 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.91■□□□□ 0.78
COL4A1P02462 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms