Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSH4O15457 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.53■□□□□ 0.56
MSH4O15457 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.53■□□□□ 0.56
MSH4O15457 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.53■□□□□ 0.56
MSH4O15457 AC098859.1-201ENST00000502915 1238 ntBASIC18.53■□□□□ 0.56
MSH4O15457 AL512356.2-201ENST00000546955 174 ntBASIC18.53■□□□□ 0.56
MSH4O15457 AC004449.1-201ENST00000564240 433 ntBASIC18.53■□□□□ 0.56
MSH4O15457 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
MSH4O15457 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.53■□□□□ 0.56
MSH4O15457 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.53■□□□□ 0.56
MSH4O15457 AP3S2-216ENST00000617003 1561 ntBASIC18.53■□□□□ 0.56
MSH4O15457 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MSH4O15457 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 AL589702.1-201ENST00000641229 1509 ntBASIC18.53■□□□□ 0.56
MSH4O15457 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
MSH4O15457 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.53■□□□□ 0.56
MSH4O15457 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
MSH4O15457 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH4O15457 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
MSH4O15457 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH4O15457 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
MSH4O15457 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
MSH4O15457 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.52■□□□□ 0.56
MSH4O15457 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH4O15457 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH4O15457 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.52■□□□□ 0.56
MSH4O15457 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.52■□□□□ 0.56
MSH4O15457 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.52■□□□□ 0.56
MSH4O15457 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH4O15457 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH4O15457 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
MSH4O15457 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
MSH4O15457 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSH4O15457 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.52■□□□□ 0.55
MSH4O15457 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.52■□□□□ 0.55
MSH4O15457 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSH4O15457 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.52■□□□□ 0.55
MSH4O15457 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.51■□□□□ 0.55
MSH4O15457 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.51■□□□□ 0.55
MSH4O15457 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 RARRES2P9-201ENST00000565168 469 ntBASIC18.51■□□□□ 0.55
MSH4O15457 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.51■□□□□ 0.55
MSH4O15457 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.51■□□□□ 0.55
MSH4O15457 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH4O15457 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH4O15457 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.5■□□□□ 0.55
MSH4O15457 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.5■□□□□ 0.55
MSH4O15457 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
MSH4O15457 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms