Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 MTHFR-217ENST00000641820 1569 ntBASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS9D1Q9Y2B5 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 HLA-A-201ENST00000376802 1334 ntBASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 AC096734.2-201ENST00000562054 433 ntBASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 Z83851.2-201ENST00000609564 659 ntBASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 AC007064.4-201ENST00000637740 555 ntBASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS9D1Q9Y2B5 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS9D1Q9Y2B5 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 AL139384.1-201ENST00000612143 3047 ntBASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 RNU1-129P-201ENST00000384064 167 ntBASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 HCG4B-203ENST00000450128 991 ntBASIC16.51■□□□□ 0.23
VPS9D1Q9Y2B5 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms