Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.27■□□□□ 0.67
CCDC39Q9UFE4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CCDC39Q9UFE4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC39Q9UFE4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CCDC39Q9UFE4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC39Q9UFE4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 SART3-203ENST00000546611 1184 ntBASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC39Q9UFE4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 AL590787.1-201ENST00000568856 1315 ntBASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 AKR1C7P-201ENST00000305623 895 ntBASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 AC139887.3-201ENST00000568585 713 ntBASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 MTDHP4-201ENST00000600287 670 ntBASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 IFNL4P1-201ENST00000607083 540 ntBASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC39Q9UFE4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms