Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 AC020765.3-201ENST00000613051 740 ntBASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 PMS2P7-201ENST00000506558 1336 ntBASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC21.26■□□□□ 0.99
SMC4Q9NTJ3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 AC016027.1-202ENST00000607927 1699 ntBASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.25■□□□□ 0.99
SMC4Q9NTJ3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 AC091812.2-201ENST00000619081 385 ntBASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 LINC01144-201ENST00000626198 1710 ntBASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC4Q9NTJ3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 AC099522.2-201ENST00000607001 744 ntBASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC4Q9NTJ3 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms