Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HPS4Q9NQG7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 AC021097.1-201ENST00000607902 574 ntBASIC17.15■□□□□ 0.34
HPS4Q9NQG7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.15■□□□□ 0.34
HPS4Q9NQG7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HPS4Q9NQG7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HPS4Q9NQG7 AD000864.1-201ENST00000624076 2295 ntBASIC17.14■□□□□ 0.33
HPS4Q9NQG7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 FAM207CP-201ENST00000443486 507 ntBASIC17.14■□□□□ 0.33
HPS4Q9NQG7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 AC073389.1-201ENST00000595595 795 ntBASIC17.14■□□□□ 0.33
HPS4Q9NQG7 LINC02560-201ENST00000596379 459 ntBASIC17.14■□□□□ 0.33
HPS4Q9NQG7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.14■□□□□ 0.33
HPS4Q9NQG7 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.13■□□□□ 0.33
HPS4Q9NQG7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms