Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 OR6D1P-203ENST00000641209 4860 ntBASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 AKAP8P1-201ENST00000434743 1349 ntBASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 AL355306.1-201ENST00000415580 579 ntBASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 RARRES2P8-201ENST00000566335 367 ntBASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 AC079781.4-201ENST00000641908 219 ntBASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TRIM39Q9HCM9 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 AL603756.1-201ENST00000606511 2163 ntBASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 ADH5P3-201ENST00000433842 1137 ntBASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 AP006288.1-201ENST00000446065 395 ntBASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 AC026120.1-201ENST00000611536 926 ntBASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM39Q9HCM9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
TRIM39Q9HCM9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM39Q9HCM9 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
TRIM39Q9HCM9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM39Q9HCM9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM39Q9HCM9 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 WASH6P-202ENST00000359512 1437 ntBASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM39Q9HCM9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms